STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49082.1Protein of unknown function DUF892. (175 aa)    
Predicted Functional Partners:
AEI50794.1
Catalase.
  
 0.975
AEI51592.1
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
  
     0.539
AEI50129.1
Protein of unknown function DUF421.
 
     0.531
AEI47797.1
Conserved hypothetical protein CHP02284.
 
    0.501
AEI51815.1
Hypothetical protein.
 
  
 0.500
AEI49043.1
Outer membrane protein-like protein.
 
  
 0.453
AEI49510.1
DNA topoisomerase.
 
     0.434
AEI49081.1
Protein of unknown function UPF0118.
       0.430
AEI49511.1
3-oxoacyl-(acyl-carrier-protein) reductase.
 
     0.413
AEI49083.1
acetyl-CoA carboxylase, biotin carboxylase.
       0.405
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.