STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49087.1Phosphate acyltransferase. (312 aa)    
Predicted Functional Partners:
AEI48643.1
Glycerol-3-phosphate acyltransferase.
 
  
 0.984
AEI49088.1
50S ribosomal protein L32.
  
  
 0.954
AEI49086.1
3-oxoacyl-(acyl-carrier-protein) synthase 3.
 
  
 0.930
AEI50045.1
Phospholipid/glycerol acyltransferase.
  
 
 0.920
Runsl_3923
tRNA-Gln.
  
  
 0.916
AEI48099.1
Ribosomal protein S4.
   
  
 0.886
AEI48101.1
30S ribosomal protein S13.
   
    0.885
AEI48109.1
Ribosomal protein L18.
   
    0.879
AEI48106.1
Ribosomal protein L15.
   
    0.876
AEI48111.1
Ribosomal protein S8.
   
    0.876
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.