STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49093.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
AEI50054.1
LmbE family protein.
 
     0.760
AEI50633.1
Na+/solute symporter.
  
     0.710
AEI49094.1
Hypothetical protein.
       0.610
AEI47482.1
UPF0747 protein.
  
     0.587
AEI51668.1
Protein of unknown function DUF1094.
  
     0.562
AEI51455.1
Protein of unknown function DUF2480.
  
     0.540
AEI49180.1
Transcriptional regulator, AraC family.
 
 
 0.509
AEI49533.1
Glycosyl transferase group 1.
  
     0.500
AEI49095.1
Protein of unknown function DUF1501.
       0.483
AEI47412.1
Protein of unknown function DUF1684.
  
     0.448
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.