STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49110.1Helix-turn-helix domain protein. (190 aa)    
Predicted Functional Partners:
AEI50369.1
FAD dependent oxidoreductase.
 
  
 0.716
AEI49109.1
Hypothetical protein.
       0.682
AEI50368.1
Haloacid dehalogenase domain protein hydrolase.
 
     0.644
AEI47594.1
Hypothetical protein.
 
     0.624
AEI49111.1
Peptidase M28.
       0.605
AEI48551.1
Transcriptional regulator, GntR family.
 
  
 0.544
AEI49106.1
Hypothetical protein.
       0.502
AEI49107.1
Two component transcriptional regulator, LytTR family.
       0.502
AEI49108.1
Putative signal transduction histidine kinase.
       0.502
AEI50494.1
Transcriptional regulator, GntR family with UTRA sensor domain.
  
  
 0.468
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.