STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49124.1TetR family transcriptional regulator. (177 aa)    
Predicted Functional Partners:
AEI49125.1
Hypothetical protein.
       0.773
AEI51378.1
NmrA family protein.
  
     0.761
AEI48132.1
Low specificity phosphatase (HAD superfamily)-like protein.
  
     0.685
AEI51068.1
Hypothetical protein.
  
     0.671
AEI48209.1
Hypothetical protein.
  
     0.643
AEI51000.1
Lipid A 3-O-deacylase-related protein.
  
   
 0.604
AEI49123.1
Hypothetical protein.
       0.590
AEI49122.1
Hypothetical protein.
       0.588
AEI50195.1
Cupin 2 conserved barrel domain protein.
  
     0.576
AEI51577.1
Regulatory protein MarR.
  
   
 0.568
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.