STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49132.1Two component regulator propeller domain protein. (789 aa)    
Predicted Functional Partners:
AEI49140.1
Hypothetical protein.
 
     0.795
AEI49141.1
PhoPQ-activated pathogenicity-related protein PqaA type.
 
     0.781
AEI49139.1
Hypothetical protein.
 
     0.766
AEI49137.1
Hypothetical protein.
 
     0.756
AEI51833.1
Protein of unknown function DUF1549.
  
     0.740
AEI49138.1
TonB-dependent receptor plug.
 
     0.735
AEI48140.1
Hypothetical protein.
  
     0.727
AEI51832.1
Protein of unknown function DUF1501.
  
     0.726
AEI49136.1
TonB-dependent receptor plug.
 
     0.665
AEI46503.1
WD40-like beta Propeller containing protein.
 
     0.656
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.