STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49140.1Hypothetical protein. (414 aa)    
Predicted Functional Partners:
AEI49141.1
PhoPQ-activated pathogenicity-related protein PqaA type.
 
     0.894
AEI49139.1
Hypothetical protein.
 
     0.880
AEI49138.1
TonB-dependent receptor plug.
 
     0.850
AEI49132.1
Two component regulator propeller domain protein.
 
     0.795
AEI49131.1
Hypothetical protein.
 
     0.793
AEI46502.1
Hypothetical protein.
  
     0.770
AEI46501.1
Hypothetical protein.
  
     0.769
AEI49137.1
Hypothetical protein.
 
     0.764
AEI50985.1
Hypothetical protein.
  
     0.763
AEI49187.1
Transcriptional regulator, AraC family.
 
  
 0.664
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.