STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49147.1Cytochrome c class I. (776 aa)    
Predicted Functional Partners:
AEI51484.1
Protein of unknown function DUF1080.
     0.793
Runsl_0537
Quinoprotein glucose dehydrogenase.
 
     0.686
AEI48430.1
Hypothetical protein.
 
     0.654
AEI49148.1
L-alanine-DL-glutamate epimerase-like protein.
       0.637
AEI51811.1
Protein of unknown function DUF1080.
 
     0.630
AEI48829.1
Protein of unknown function DUF1080.
     0.624
AEI51076.1
Protein of unknown function DUF1080.
     0.600
AEI49795.1
Protein of unknown function DUF1080.
 
      0.599
AEI48801.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.588
AEI48805.1
TatD-related deoxyribonuclease.
  
     0.579
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.