STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49151.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
AEI47540.1
TonB-dependent receptor plug.
  
 
 0.837
Runsl_4120
TonB-dependent receptor.
  
 
 0.730
AEI49138.1
TonB-dependent receptor plug.
  
 
 0.722
AEI51235.1
TonB-dependent receptor plug.
  
 
 0.722
AEI49150.1
Hypothetical protein.
       0.590
AEI47853.1
Biopolymer transport protein ExbD/TolR.
  
 
 0.510
AEI47868.1
Biopolymer transport protein ExbD/TolR.
  
 
 0.510
AEI47869.1
Biopolymer transport protein ExbD/TolR.
  
 
 0.510
AEI49152.1
Esterase.
  
    0.495
AEI47854.1
MotA/TolQ/ExbB proton channel.
  
 
 0.493
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.