STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_2780Protein of unknown function DUF1080. (530 aa)    
Predicted Functional Partners:
AEI51893.1
Protein of unknown function DUF1080.
  
     0.762
AEI48318.1
Oxidoreductase domain protein.
  
    0.742
AEI47296.1
Oxidoreductase domain protein.
  
    0.736
AEI51247.1
Oxidoreductase domain protein.
  
    0.734
AEI48795.1
Oxidoreductase domain protein.
  
    0.730
AEI48905.1
Oxidoreductase domain protein.
  
    0.725
AEI49120.1
Oxidoreductase domain protein.
  
    0.719
AEI51623.1
Oxidoreductase domain protein.
  
    0.700
AEI49684.1
Oxidoreductase domain protein.
  
    0.654
AEI49174.1
Transcriptional regulator, AraC family.
       0.613
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.