STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49174.1Transcriptional regulator, AraC family. (285 aa)    
Predicted Functional Partners:
AEI51385.1
Transcriptional regulator, AraC family.
  
     0.627
AEI49175.1
Hypothetical protein.
       0.623
Runsl_2780
Protein of unknown function DUF1080.
       0.613
AEI50474.1
Transcriptional regulator, AraC family.
  
     0.566
AEI49923.1
Transcriptional regulator, AraC family.
  
     0.519
AEI51061.1
Transcriptional regulator, AraC family.
  
   0.518
AEI48150.1
Chromate transporter, chromate ion transporter (CHR) family.
 
   
 0.504
AEI49187.1
Transcriptional regulator, AraC family.
 
 
 0.489
AEI50382.1
Transcriptional regulator, AraC family.
  
     0.466
AEI50180.1
Transcriptional regulator, AraC family.
  
   0.465
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.