Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49212.1Hypothetical protein. (975 aa)    
Predicted Functional Partners:
AEI49211.1
5-formyltetrahydrofolate cyclo-ligase.
       0.590
AEI48425.1
Outer membrane efflux protein.
  
     0.578
AEI51921.1
TonB-dependent receptor plug.
  
     0.574
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
   
 0.559
AEI47539.1
Hypothetical protein.
  
     0.558
AEI50708.1
TonB-dependent receptor plug.
  
     0.554
AEI46870.1
TonB-dependent receptor plug.
  
    0.542
AEI51601.1
Hypothetical protein.
  
     0.530
AEI49032.1
TonB-dependent receptor plug.
  
    0.501
AEI46551.1
Protein of unknown function, membrane YfhO.
  
     0.495
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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