STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49213.1Aspartate-semialdehyde dehydrogenase. (336 aa)    
Predicted Functional Partners:
AEI46858.1
Aspartate kinase.
 
 0.997
AEI47485.1
Aspartate kinase.
 
 
 0.977
AEI49467.1
Dihydrodipicolinate synthase.
 
 
 0.962
AEI49340.1
Dihydrodipicolinate synthetase.
  
 
 0.927
AEI50717.1
Glutamate synthase (ferredoxin).
  
  
 0.635
AEI50967.1
RNA polymerase, sigma 70 subunit, RpoD subfamily.
    
 0.629
AEI51848.1
Diaminopimelate decarboxylase.
 
  
 0.595
AEI50463.1
Alanine racemase.
 
  
 0.593
AEI49423.1
Homoserine kinase.
 
  
 0.589
AEI48621.1
Shikimate dehydrogenase substrate binding domain protein.
  
 
 0.586
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.