STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49249.1ABC transporter related protein. (622 aa)    
Predicted Functional Partners:
AEI47941.1
50S ribosomal protein L21.
  
   0.766
AEI48124.1
Ribosomal protein L4/L1e.
   
 
 0.764
AEI48119.1
Ribosomal protein S3.
   
   0.761
AEI51721.1
50S ribosomal protein L20.
  
 
 0.758
AEI48125.1
50S ribosomal protein L3.
   
 
 0.757
AEI48835.1
Ribosomal protein S7.
  
 
 0.755
AEI48107.1
Ribosomal protein L30.
   
   0.753
AEI50969.1
Ribosomal protein S15.
   
   0.753
AEI47840.1
50S ribosomal protein L34.
   
   0.751
AEI47940.1
50S ribosomal protein L27.
  
 
 0.749
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.