STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49258.1WxcM-like domain-containing protein. (121 aa)    
Predicted Functional Partners:
AEI49259.1
Glutamine--scyllo-inositol transaminase.
 
  
 0.957
AEI49260.1
Glycosyl transferase family 2.
 
    0.824
AEI49261.1
Methyltransferase type 12.
 
     0.744
AEI50300.1
Glutamine--scyllo-inositol transaminase.
 
  
 0.660
AEI49262.1
Hypothetical protein.
       0.639
AEI49263.1
Cellulase.
       0.639
AEI48322.1
Glutamine--scyllo-inositol transaminase.
 
  
 0.543
AEI49164.1
Glutamine--scyllo-inositol transaminase.
 
  
 0.489
AEI47950.1
Hypothetical protein.
 
   
 0.462
AEI48001.1
DegT/DnrJ/EryC1/StrS aminotransferase.
 
  
 0.450
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.