STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49263.1Cellulase. (356 aa)    
Predicted Functional Partners:
AEI49262.1
Hypothetical protein.
       0.773
AEI49261.1
Methyltransferase type 12.
       0.762
AEI49258.1
WxcM-like domain-containing protein.
       0.639
AEI49259.1
Glutamine--scyllo-inositol transaminase.
       0.639
AEI49260.1
Glycosyl transferase family 2.
       0.639
AEI51455.1
Protein of unknown function DUF2480.
  
     0.630
AEI48136.1
Hypothetical protein.
  
     0.479
AEI46485.1
Hypothetical protein.
  
     0.467
AEI47809.1
Oligoendopeptidase, M3 family.
 
  
 0.428
AEI50864.1
Alpha/beta hydrolase fold protein.
  
     0.411
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.