STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49267.1Oxidoreductase domain protein. (434 aa)    
Predicted Functional Partners:
AEI49683.1
Protein of unknown function DUF1080.
 
     0.647
AEI48639.1
Protein of unknown function DUF1080.
 
     0.625
AEI51484.1
Protein of unknown function DUF1080.
 
     0.569
AEI51076.1
Protein of unknown function DUF1080.
 
     0.568
AEI49795.1
Protein of unknown function DUF1080.
  
     0.560
AEI48289.1
Oxidoreductase domain protein.
 
     0.531
AEI49268.1
Hypothetical protein.
  
    0.516
AEI49269.1
Abortive phage resistance protein.
       0.505
AEI51055.1
Oxidoreductase domain protein.
 
     0.500
AEI49997.1
Oxidoreductase domain protein.
  
     0.491
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.