STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49285.1DNA polymerase beta domain protein region. (107 aa)    
Predicted Functional Partners:
AEI51748.1
HEPN domain protein.
 
     0.776
AEI49284.1
Hypothetical protein.
       0.773
AEI49424.1
HEPN domain protein.
 
     0.771
AEI47190.1
Protein of unknown function DUF86.
 
  
  0.763
AEI47078.1
HEPN domain protein.
 
     0.693
AEI49286.1
Protein of unknown function DUF2252.
       0.497
AEI47077.1
DNA polymerase beta domain protein region.
 
   
 0.458
AEI49283.1
Hypothetical protein.
       0.455
AEI47496.1
Hypothetical protein.
  
     0.441
AEI49634.1
Acriflavin resistance protein.
  
     0.425
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.