STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49287.1Peptidase S13 D-Ala-D-Ala carboxypeptidase C. (442 aa)    
Predicted Functional Partners:
AEI47929.1
Penicillin-binding protein 1C.
   
 
 0.917
AEI50696.1
Peptidoglycan glycosyltransferase.
     
 0.916
AEI48023.1
Monofunctional biosynthetic peptidoglycan transglycosylase.
     
 0.915
AEI49811.1
Peptidoglycan glycosyltransferase.
     
 0.915
AEI50221.1
Penicillin-binding protein 2.
     
 0.915
AEI51182.1
Peptidoglycan glycosyltransferase.
     
 0.915
AEI50982.1
Ankyrin.
   
 
 0.798
AEI49286.1
Protein of unknown function DUF2252.
       0.605
AEI50707.1
Hypothetical protein.
   
 
 0.549
AEI49288.1
Polyprenyl synthetase.
       0.451
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.