STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49288.1Polyprenyl synthetase. (325 aa)    
Predicted Functional Partners:
AEI48774.1
Undecaprenyl pyrophosphate synthase.
 
 
 0.977
AEI48884.1
Squalene/phytoene synthase.
  
 0.932
Runsl_3104
Trans-hexaprenyltranstransferase.
  
  
 
0.926
AEI48619.1
Hydroxymethylbutenyl pyrophosphate reductase.
  
 
 0.924
AEI46692.1
Methionyl-tRNA synthetase.
 
     0.726
AEI48791.1
Nucleoside-triphosphatase rdgB.
 
    0.695
Runsl_1103
Phosphoglucosamine mutase.
 
   
 0.637
AEI49373.1
Cytidylate kinase.
 
    0.631
AEI47958.1
Signal recognition particle-docking protein FtsY.
 
  
 0.622
AEI48621.1
Shikimate dehydrogenase substrate binding domain protein.
 
   
 0.568
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.