STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49326.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
AEI49325.1
Hypothetical protein.
 
     0.899
AEI49331.1
Hypothetical protein.
 
     0.865
AEI49332.1
Hypothetical protein.
 
     0.850
AEI49333.1
Hypothetical protein.
 
     0.806
AEI49327.1
YceI family protein.
       0.776
AEI49328.1
Hypothetical protein.
       0.724
AEI49329.1
Electron transfer DM13.
 
     0.627
AEI46883.1
YHS domain protein.
 
     0.587
AEI49330.1
Transcriptional regulator, Crp/Fnr family.
 
     0.495
AEI51565.1
Alpha/beta hydrolase fold protein.
  
     0.493
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.