Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49339.1Xylose isomerase. (442 aa)    
Predicted Functional Partners:
AEI47520.1
Xylulokinase.
 
 
 0.983
AEI50842.1
ROK family protein.
    
 0.910
AEI47623.1
Glycosyl hydrolase family 32 domain protein.
     
 0.908
AEI47620.1
Fructokinase.
    
 0.907
AEI47689.1
Fructokinase.
    
 0.907
AEI46943.1
L-iditol 2-dehydrogenase.
     
 0.906
AEI51892.1
Alditol oxidase.
     
  0.900
AEI48188.1
Coagulation factor 5/8 type domain protein.
  
 
 0.850
AEI48641.1
Glucokinase.
    
 0.821
AEI49189.1
Glucokinase.
    
 0.821
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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