STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49341.1Protein of unknown function DUF1680. (618 aa)    
Predicted Functional Partners:
AEI49750.1
alpha-L-arabinofuranosidase domain protein.
 
   
 0.754
AEI48972.1
alpha-L-rhamnosidase.
 
    0.601
AEI46480.1
Glycoside hydrolase family 2 sugar binding protein.
 
     0.579
AEI49342.1
Oligopeptide transporter, OPT family.
       0.566
AEI46897.1
alpha-L-rhamnosidase.
 
    0.531
AEI49340.1
Dihydrodipicolinate synthetase.
       0.511
AEI49749.1
L-arabinose isomerase.
 
     0.465
AEI48520.1
Beta-galactosidase.
 
     0.413
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.