STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49347.1Transcriptional regulator, TetR family. (225 aa)    
Predicted Functional Partners:
AEI49345.1
Outer membrane efflux protein.
 
     0.872
AEI49343.1
Acriflavin resistance protein.
 
   
 0.711
AEI49344.1
Efflux transporter, RND family, MFP subunit.
 
     0.674
AEI49346.1
Hypothetical protein.
       0.578
AEI49348.1
HNH endonuclease.
       0.469
AEI47238.1
Transcriptional regulator, TetR family.
  
     0.423
AEI46634.1
Lipoprotein.
  
     0.411
AEI51864.1
Regulatory protein TetR.
  
     0.406
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.