STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49362.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
AEI49361.1
Cytochrome c oxidase subunit III.
 
  
 0.977
AEI49356.1
Cytochrome c oxidase subunit II.
 
  
 0.964
AEI49360.1
Cytochrome c oxidase subunit III.
 
  
 0.963
AEI49359.1
Protoheme IX farnesyltransferase.
 
  
  0.959
AEI49357.1
Cytochrome c oxidase subunit I.
    
 0.954
AEI46530.1
Cytochrome c oxidase subunit III.
 
  
 0.922
AEI51546.1
Cytochrome c oxidase, cbb3-type, subunit I.
     
  0.900
AEI51547.1
Cytochrome c class I.
     
  0.900
AEI49365.1
Hypothetical protein.
 
     0.752
AEI49576.1
Cytochrome c-type biogenesis protein CcmB.
  
     0.743
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.