STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49368.1Protein of unknown function DUF37. (149 aa)    
Predicted Functional Partners:
AEI47841.1
Ribonuclease P protein component.
  
  
 0.870
AEI49367.1
Hypothetical protein.
       0.809
AEI49369.1
Hypothetical protein.
       0.809
AEI49370.1
Hypothetical protein.
       0.809
AEI48238.1
Preprotein translocase, SecE subunit.
   
    0.777
AEI47487.1
seryl-tRNA synthetase.
  
    0.775
AEI50068.1
Membrane protein oxaA.
  
  
 0.768
AEI50069.1
Transcription termination factor Rho.
  
    0.675
AEI48122.1
Ribosomal protein L2.
   
    0.616
AEI48124.1
Ribosomal protein L4/L1e.
   
    0.577
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.