STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49373.1Cytidylate kinase. (257 aa)    
Predicted Functional Partners:
AEI48152.1
GTP-binding protein engA.
  
 0.991
AEI48787.1
Nucleoside diphosphate kinase.
  
 
 0.929
AEI49349.1
RNA binding S1 domain protein.
 
  
 0.928
AEI46611.1
Multifunctional protein surE.
    
 0.923
AEI47455.1
Ribonucleoside-diphosphate reductase, alpha subunit.
  
 
 0.923
AEI46619.1
Ribonucleoside-diphosphate reductase.
    
 0.922
AEI47837.1
Septum formation protein Maf.
 
  
  0.922
AEI48286.1
Uridine kinase.
   
 
 0.922
AEI49058.1
3-phosphoshikimate 1-carboxyvinyltransferase.
    
 0.922
AEI46618.1
Deoxyadenosine kinase.
   
 
  0.910
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.