STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49374.1FAD dependent oxidoreductase. (356 aa)    
Predicted Functional Partners:
AEI49373.1
Cytidylate kinase.
  
    0.794
AEI49375.1
Surface antigen (D15).
  
    0.727
AEI51912.1
Aminotransferase class V.
 
 
 0.558
AEI46886.1
Ferredoxin--NAD(+) reductase.
  
 
 0.530
AEI49372.1
Hypothetical protein.
  
    0.511
AEI46540.1
ATP-dependent Clp protease adaptor protein ClpS.
  
   
 0.502
AEI48711.1
Aminomethyltransferase.
  
 
 0.472
AEI49531.1
Gliding motility-associated lipoprotein GldD.
  
     0.436
AEI49089.1
Protein of unknown function DUF177.
  
     0.416
AEI49856.1
GSCFA domain protein.
 
     0.405
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.