STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_2999Secretion protein HlyD family protein. (440 aa)    
Predicted Functional Partners:
AEI47371.1
Xenobiotic-transporting ATPase.
 
 
 0.855
AEI48403.1
Xenobiotic-transporting ATPase.
 
 
 0.855
AEI49181.1
Xenobiotic-transporting ATPase.
 
 
 0.854
Runsl_3052
Peptidase C39 bacteriocin processing.
 
     0.788
AEI48872.1
Xenobiotic-transporting ATPase.
 
 
 0.731
AEI50557.1
Xenobiotic-transporting ATPase.
 
 
 0.688
AEI48870.1
Lanthionine synthetase C family protein.
 
     0.677
AEI50720.1
Xenobiotic-transporting ATPase.
 
 
 0.657
AEI48854.1
ABC-type bacteriocin transporter.
 
 
 0.581
AEI48871.1
Lantibiotic dehydratase domain protein.
 
   
 0.540
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.