STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49392.1Ribosome maturation factor rimP. (155 aa)    
Predicted Functional Partners:
AEI48836.1
Ribosomal protein S12.
   
   0.967
AEI49393.1
NusA antitermination factor.
  
  
 0.960
AEI50439.1
30S ribosomal protein S16.
   
   0.937
AEI49394.1
Translation initiation factor IF-2.
  
  
 0.931
AEI51677.1
30S ribosomal protein S6.
  
 
 0.917
AEI48835.1
Ribosomal protein S7.
   
 
 0.911
AEI48101.1
30S ribosomal protein S13.
  
 
 0.900
AEI48116.1
30S ribosomal protein S17.
  
 
 0.898
AEI47123.1
30S ribosomal protein S10.
   
 
 0.894
AEI48119.1
Ribosomal protein S3.
   
 
 0.893
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.