STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49399.1Metallophosphoesterase. (273 aa)    
Predicted Functional Partners:
AEI49832.1
lipid-A-disaccharide synthase.
 
  
 0.940
AEI47276.1
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
  
  
 0.937
AEI46551.1
Protein of unknown function, membrane YfhO.
 
     0.736
AEI47113.1
Hypothetical protein.
 
     0.717
AEI48185.1
Hypothetical protein.
  
     0.694
AEI50177.1
Protein of unknown function DUF1573.
  
     0.693
AEI48772.1
Outer membrane chaperone Skp (OmpH).
  
     0.691
AEI51601.1
Hypothetical protein.
  
     0.678
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
  
     0.676
Runsl_1103
Phosphoglucosamine mutase.
 
     0.669
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.