STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49403.1Sec-independent protein translocase protein tatA/E-like protein. (67 aa)    
Predicted Functional Partners:
AEI48593.1
Sec-independent protein translocase, TatC subunit.
 
 0.996
AEI47030.1
GMP synthase (glutamine-hydrolyzing).
  
  
 0.941
AEI47271.1
Histidine biosynthesis bifunctional protein hisIE.
  
  
 0.712
AEI49405.1
Lytic transglycosylase catalytic.
 
  
 0.642
AEI49404.1
Glutamyl-tRNA(Gln) amidotransferase subunit A.
  
  
 0.615
AEI47261.1
Rhomboid family protein.
  
 
 0.611
AEI48827.1
Glutamine amidotransferase class-I.
  
    0.595
AEI49462.1
Hypothetical protein.
  
    0.595
AEI48490.1
Protein-export membrane protein SecD.
  
  
 0.553
AEI47260.1
Rhomboid family protein.
   
 
 0.541
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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