STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49405.1Lytic transglycosylase catalytic. (474 aa)    
Predicted Functional Partners:
AEI49404.1
Glutamyl-tRNA(Gln) amidotransferase subunit A.
     
 0.698
AEI51899.1
Signal peptidase I.
 
  
 0.691
AEI50221.1
Penicillin-binding protein 2.
 
 
 0.645
AEI49403.1
Sec-independent protein translocase protein tatA/E-like protein.
 
  
 0.642
AEI49491.1
Multi-sensor hybrid histidine kinase.
  
  
 0.613
AEI48202.1
Cell division protein FtsA.
 
   
 0.597
AEI49730.1
Protein of unknown function DUF214.
 
     0.596
AEI51120.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
  
 0.584
AEI50696.1
Peptidoglycan glycosyltransferase.
 
   
 0.560
AEI49406.1
Conserved hypothetical protein CHP00701.
       0.542
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.