Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEI49406.1Conserved hypothetical protein CHP00701. (177 aa)    
Predicted Functional Partners:
AEI48740.1
Ferrochelatase.
 
  
 0.951
AEI50918.1
Coproporphyrinogen oxidase.
 
  
 0.949
AEI51551.1
Oxygen-independent coproporphyrinogen III oxidase.
 
  
 0.937
AEI47220.1
Mg-chelatase subunit ChlI-like protein.
     
 0.903
AEI49407.1
Restriction endonuclease.
       0.610
AEI49405.1
Lytic transglycosylase catalytic.
       0.542
AEI47879.1
Uroporphyrinogen decarboxylase.
 
   
 0.451
AEI49404.1
Glutamyl-tRNA(Gln) amidotransferase subunit A.
       0.441
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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