STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49410.1Hypothetical protein. (233 aa)    
Predicted Functional Partners:
AEI46749.1
Phytanoyl-CoA dioxygenase.
  
     0.523
AEI49409.1
LytTr DNA-binding region.
       0.504
Runsl_2774
Alpha/beta hydrolase fold protein.
  
     0.480
AEI49408.1
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
       0.462
AEI48809.1
Hypothetical protein.
  
     0.446
AEI50114.1
HAD-superfamily hydrolase, subfamily IIA.
  
     0.440
AEI47759.1
YCII-related protein.
  
     0.414
AEI51085.1
Hypothetical protein.
  
     0.413
AEI48628.1
Methyltransferase FkbM family.
  
     0.412
AEI48333.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.