STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49424.1HEPN domain protein. (105 aa)    
Predicted Functional Partners:
AEI49425.1
DNA polymerase beta domain protein region.
 
     0.945
AEI47077.1
DNA polymerase beta domain protein region.
 
     0.789
AEI49285.1
DNA polymerase beta domain protein region.
 
     0.769
AEI51749.1
DNA polymerase beta domain protein region.
 
     0.755
AEI46917.1
Protein of unknown function DUF820.
  
     0.678
AEI50004.1
Protein of unknown function DUF820.
  
     0.676
AEI48600.1
Protein of unknown function DUF820.
  
     0.632
AEI49423.1
Homoserine kinase.
       0.556
AEI50078.1
Protein of unknown function DUF820.
  
     0.505
AEI47190.1
Protein of unknown function DUF86.
  
     0.459
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.