STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49428.1Amine oxidase. (456 aa)    
Predicted Functional Partners:
AEI49939.1
Histone deacetylase superfamily.
   
 0.848
AEI47860.1
DNA polymerase III, beta subunit.
   
  
 0.571
AEI47286.1
Sarcosine oxidase.
 
  
 0.562
AEI49427.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
       0.526
AEI46555.1
SNF2-related protein.
    
 0.428
AEI46707.1
SNF2-related protein.
    
 0.428
AEI50622.1
Helicase domain-containing protein.
    
 0.428
AEI51147.1
SNF2-related protein.
    
 0.428
AEI51413.1
SNF2-related protein.
    
 0.428
AEI48884.1
Squalene/phytoene synthase.
   
  
 0.411
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.