STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49431.1ATP-dependent DNA helicase RecQ. (746 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
  
 0.913
AEI51034.1
DNA topoisomerase I.
  
 0.859
AEI46535.1
SMC domain protein.
  
 0.858
AEI49566.1
Protein recA.
  
 0.847
AEI48914.1
UvrD/REP helicase.
  
 
 0.788
AEI47918.1
Ribonuclease H.
  
 
 0.773
AEI47259.1
DNA mismatch repair protein mutL.
  
 0.764
AEI49510.1
DNA topoisomerase.
    
 
 0.748
AEI47860.1
DNA polymerase III, beta subunit.
  
 0.646
AEI49432.1
Phosphoribosylamine--glycine ligase.
   
   0.637
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.