STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49438.1Nitrogen-fixing NifU domain-containing protein. (195 aa)    
Predicted Functional Partners:
AEI51043.1
Succinate dehydrogenase and fumarate reductase iron-sulfur protein.
  
 
 0.768
Runsl_4050
Lipoyl synthase.
  
 0.641
AEI51891.1
Iron-sulfur cluster assembly accessory protein.
 
 
 0.632
AEI48033.1
Cysteine desulfurase.
 
 
 0.630
AEI51590.1
Cysteine desulfurase.
 
 
 0.612
AEI46887.1
Ferredoxin.
 
 
 0.592
AEI48926.1
Porphobilinogen deaminase.
 
      0.584
AEI48463.1
HesB/YadR/YfhF-family protein.
  
 
 0.572
AEI51224.1
Glutamate synthase (NADPH).
  
  
 0.530
AEI51890.1
Nitric oxide dioxygenase.
  
 
 0.465
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.