STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49451.1Beta-lactamase. (506 aa)    
Predicted Functional Partners:
AEI50600.1
Peptidase S9 prolyl oligopeptidase active site domain protein.
 
     0.726
AEI49447.1
Beta-lactamase.
    
 0.647
AEI47345.1
Peptidase S9 prolyl oligopeptidase active site domain protein.
 
     0.573
AEI49452.1
Glycosyl hydrolase BNR repeat-containing protein.
       0.572
AEI49450.1
Outer membrane efflux protein.
       0.509
AEI48796.1
Peptidase M15D vanX D-ala-D-ala dipeptidase.
    
 0.508
AEI49453.1
MATE efflux family protein.
     
 0.479
AEI48562.1
Amidohydrolase 3.
 
     0.434
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.