STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49453.1MATE efflux family protein. (448 aa)    
Predicted Functional Partners:
AEI48884.1
Squalene/phytoene synthase.
   
  
 0.744
AEI50896.1
Glyceraldehyde-3-phosphate dehydrogenase, type I.
  
  
 0.675
AEI49349.1
RNA binding S1 domain protein.
  
    0.651
AEI49454.1
Hypothetical protein.
       0.639
AEI49452.1
Glycosyl hydrolase BNR repeat-containing protein.
       0.615
AEI49451.1
Beta-lactamase.
     
 0.479
AEI51397.1
Multi-sensor hybrid histidine kinase.
  
  
 0.435
AEI49455.1
Chaperone protein dnaJ.
  
  
 0.432
AEI48106.1
Ribosomal protein L15.
    
   0.431
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.