STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49481.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
AEI50249.1
Type I restriction-modification system, M subunit.
  
  
 0.836
AEI49871.1
Type I site-specific deoxyribonuclease, HsdR family.
  
    0.517
AEI50250.1
Type I site-specific deoxyribonuclease, HsdR family.
  
    0.517
AEI50785.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
  
    0.517
AEI51573.1
Type I site-specific deoxyribonuclease, HsdR family.
  
    0.517
AEI47931.1
Putative transcriptional regulator.
  
    0.483
AEI50607.1
Putative transcriptional regulator.
  
    0.483
Runsl_4287
Putative transcriptional regulator.
  
    0.483
AEI49708.1
Type I restriction-modification system, S subunit.
  
    0.464
AEI49711.1
Restriction modification system DNA specificity domain protein.
  
    0.464
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.