STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49499.1Lactate utilization protein B/C. (192 aa)    
Predicted Functional Partners:
AEI49498.1
Lactate utilization protein B/C.
 
 
 0.994
AEI49497.1
Protein of unknown function DUF224 cysteine-rich region domain protein.
 
 
 0.935
AEI51123.1
Malic protein NAD-binding protein.
  
  
 0.704
AEI47393.1
D-lactate dehydrogenase (cytochrome).
  
 
 0.649
AEI47450.1
D-lactate dehydrogenase (cytochrome).
  
 
 0.649
AEI46484.1
Protein of unknown function DUF224 cysteine-rich region domain protein.
  
 
 0.534
AEI47219.1
Oxidoreductase, Fe-S subunit.
  
 
 0.534
AEI49500.1
Hypothetical protein.
       0.505
AEI49068.1
Cytochrome c class I.
  
     0.413
AEI49030.1
Glycoside hydrolase family 2 sugar binding protein.
  
 
   0.403
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.