STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49506.1Two component transcriptional regulator, AraC family. (259 aa)    
Predicted Functional Partners:
AEI47955.1
Integral membrane sensor signal transduction histidine kinase.
 
 0.980
AEI51552.1
PAS/PAC sensor signal transduction histidine kinase.
 
 0.974
AEI51397.1
Multi-sensor hybrid histidine kinase.
 
 
 0.968
AEI48846.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 0.967
AEI48656.1
Multi-sensor hybrid histidine kinase.
 
 
 0.963
AEI51818.1
PAS/PAC sensor signal transduction histidine kinase.
 
 
 0.943
AEI50178.1
Integral membrane sensor signal transduction histidine kinase.
 
 0.938
AEI51789.1
Putative signal transduction histidine kinase.
 
 
 0.909
AEI49817.1
Two component regulator propeller domain protein.
  
 
 0.906
AEI47073.1
Periplasmic binding protein/LacI transcriptional regulator.
 
    
 0.877
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.