STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49510.1DNA topoisomerase. (368 aa)    
Predicted Functional Partners:
AEI49511.1
3-oxoacyl-(acyl-carrier-protein) reductase.
 
 
   0.892
AEI48006.1
DNA topoisomerase type IIA subunit B region 2 domain protein.
   
 
 0.886
AEI51261.1
DNA gyrase, B subunit.
   
 
 0.886
AEI47918.1
Ribonuclease H.
    
 
 0.780
AEI48612.1
ATP-dependent DNA helicase RecQ.
    
 
 0.719
AEI49431.1
ATP-dependent DNA helicase RecQ.
    
 
 0.719
AEI51310.1
ATP-dependent DNA helicase, RecQ family.
    
 
 0.719
AEI51815.1
Hypothetical protein.
 
     0.638
AEI51592.1
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
 
     0.626
AEI49043.1
Outer membrane protein-like protein.
 
     0.612
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.