STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49528.1ATP-dependent metalloprotease FtsH. (668 aa)    
Predicted Functional Partners:
AEI51559.1
GTP cyclohydrolase 1.
 
  
 0.917
AEI47383.1
ATP synthase subunit alpha.
  
 0.906
AEI48225.1
Hypoxanthine phosphoribosyltransferase.
  
  
 0.886
AEI48125.1
50S ribosomal protein L3.
  
 
 0.881
AEI49349.1
RNA binding S1 domain protein.
  
   0.877
AEI47592.1
Ribosomal protein L13.
 
 
 0.874
AEI48122.1
Ribosomal protein L2.
  
 
 0.865
AEI48400.1
Sigma 54 interacting domain protein.
  
  
 0.858
AEI48108.1
Ribosomal protein S5.
  
 
 0.856
AEI48100.1
30S ribosomal protein S11.
   
 
 0.854
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.