STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49530.1biotin/acetyl-CoA-carboxylase ligase. (252 aa)    
Predicted Functional Partners:
AEI46835.1
Hypothetical protein.
      0.814
AEI49083.1
acetyl-CoA carboxylase, biotin carboxylase.
 
 0.810
AEI48088.1
Pyruvate carboxylase.
 
  
 0.799
AEI47166.1
3-oxoacyl-(acyl-carrier-protein) synthase 2.
 
   
 0.780
Runsl_3923
tRNA-Gln.
 
   
 0.778
AEI49531.1
Gliding motility-associated lipoprotein GldD.
       0.773
AEI50117.1
Universal protein YeaZ.
  
    0.683
AEI49545.1
Propionyl-CoA carboxylase.
 
 
 0.653
AEI49529.1
Iojap-like protein.
       0.650
AEI47498.1
Biotin/lipoyl attachment domain-containing protein.
 
  
 0.634
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.