STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49539.1D-alanine--D-alanine ligase. (556 aa)    
Predicted Functional Partners:
AEI48652.1
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase.
 
 
 0.966
AEI50463.1
Alanine racemase.
 
 
 0.962
AEI48205.1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
  
 0.861
AEI49541.1
Hypothetical protein.
 
     0.824
AEI48203.1
Hypothetical protein.
 
  
 0.815
AEI48202.1
Cell division protein FtsA.
  
  
 0.777
AEI47031.1
Hypothetical protein.
  
     0.690
AEI49631.1
Tetratricopeptide domain protein.
 
     0.681
AEI47514.1
Hypothetical protein.
  
     0.680
AEI49883.1
Gliding motility associated protein GldN.
  
     0.675
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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