STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49560.1Dephospho-CoA kinase. (195 aa)    
Predicted Functional Partners:
AEI50136.1
Phosphopantetheine adenylyltransferase.
 
  
 0.943
AEI48777.1
4'-phosphopantetheinyl transferase.
     
 0.923
AEI47942.1
DNA-formamidopyrimidine glycosylase.
  
  
 0.749
AEI48486.1
DNA polymerase I.
 
  
 0.670
AEI49561.1
Hypothetical protein.
  
    0.661
AEI47918.1
Ribonuclease H.
  
    0.650
AEI49884.1
Glycosyl transferase family 2.
      0.619
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
 
   
 0.599
AEI51124.1
Riboflavin biosynthesis protein RibF.
 
  
 0.591
AEI49565.1
NusB antitermination factor.
     
 0.564
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.