STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49562.1Preprotein translocase, YajC subunit. (103 aa)    
Predicted Functional Partners:
AEI48490.1
Protein-export membrane protein SecD.
  
 
 0.992
AEI50068.1
Membrane protein oxaA.
 
 
 0.951
AEI48105.1
Preprotein translocase, SecY subunit.
   
 
 0.940
AEI50740.1
Preprotein translocase, SecG subunit.
  
 
 0.940
AEI47958.1
Signal recognition particle-docking protein FtsY.
    
 0.927
AEI51794.1
Signal recognition particle protein.
    
 0.926
AEI49794.1
Protein translocase subunit secA.
     
 0.923
AEI49950.1
Trigger factor.
  
  
 0.744
AEI49563.1
Protein of unknown function DUF1573.
       0.720
AEI49564.1
Hypothetical protein.
  
    0.716
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.